DataTransformationCRH/Report.Rmd

---
title: "Report"
author: "Data Science Team, LaNubia"
date: '`r format(Sys.time(), "%d %B, %Y")`'
output:
  html_document:
    theme: lumen
    highlight: tango
    self_contained: true
    toc: true
    toc_depth: 4
    toc_float: true
    includes:
       in_header: plausible.html

---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = FALSE, error=TRUE, message=FALSE, warning=FALSE)
library(readxl)
library(DT)
library(tidyr)
library(dplyr)
library(highcharter)
library(purrr)
library(stringr)

rxl<- function(path,...){
  tryCatch(read_excel(path,...), error= function(c){
    c$message<-"No Data"
    print("No Data")
    stop(c)
  })
}

ltodf<- function(path,...){
  tryCatch(rbind.data.frame(path,...), error= function(c){
    c$message<-"No Data"
    print("No Data")
    stop(c)
  })
}

```

**Non commercial license of Highchart library used**


## Status Report


### Input Available



```{r echo=FALSE, message=FALSE, warning=FALSE}
contactinputpath<-list.files("./contacts/raw-data", pattern="*.xls", full.names = T)
accountinputpath<-list.files("./accounts/raw-data", pattern="*.xls", full.names = T)
projectinputpath<-list.files("./projects/raw-data", pattern="*.xls", full.names = T)
supportinputpath<-list.files("./support/raw-data", pattern="*.xls", full.names = T)


conta<-lapply(contactinputpath, read_excel)
names(conta)<-gsub("./contacts/raw-data/","",contactinputpath)
c<-lapply(conta, nrow)

Input_data<-"Contact"
#Country<-gsub(".xlsx","",names(conta))
Observations<-c

temp<-data.frame(Input_data,Observations) |> 
   pivot_longer(cols = (-1), names_to = "Country", values_to = "Observations") |> 
  mutate(Country=gsub(".xls","",Country))

input.summary<-temp

acco<-lapply(accountinputpath, read_excel)
names(acco)<-gsub("./accounts/raw-data/","",accountinputpath)
a<-lapply(acco, nrow)

Input_data<-"Accounts"
#Country<-gsub(".xlsx","",names(conta))
Observations<-a

temp<-data.frame(Input_data,Observations) |> 
   pivot_longer(cols = (-1), names_to = "Country", values_to = "Observations") |> 
  mutate(Country=gsub(".xls","",Country))

input.summary<-rbind(input.summary,temp)

proja<-lapply(projectinputpath, read_excel)
names(proja)<-gsub("./projects/raw-data/","",projectinputpath)
p<-lapply(proja, nrow)

Input_data<-"Projects"
#Country<-gsub(".xlsx","",names(conta))
Observations<-p

temp<-data.frame(Input_data,Observations) |> 
   pivot_longer(cols = (-1), names_to = "Country", values_to = "Observations") |> 
  mutate(Country=gsub(".xls","",Country))

input.summary<-rbind(input.summary,temp)

suppo<-lapply(supportinputpath, read_excel)
names(suppo)<-gsub("./support/raw-data/","",supportinputpath)
s<-lapply(suppo, nrow)

Input_data<-"Support"
#Country<-gsub(".xlsx","",names(conta))
Observations<-s

temp<-data.frame(Input_data,Observations) |> 
   pivot_longer(cols = (-1), names_to = "Country", values_to = "Observations") |> 
  mutate(Country=gsub(".xls","",Country))

input.summary<-rbind(input.summary,temp)

# datatable(input.summary, extensions = "Buttons", 
#             options = list(paging = TRUE,
#                            scrollX=TRUE, 
#                            searching = TRUE,
#                            ordering = TRUE,
#                            dom = 'Bfrtip',
#                            buttons = c('copy', 'csv', 'excel', 'pdf'),
#                            pageLength=10, 
#                            lengthMenu=c(3,5,10) ))

input.summary<-input.summary |> arrange(desc(Observations))

input.summary.summ<-input.summary |> 
  group_by(Input_data) |> 
  summarise(Observations=sum(Observations)) |> 
  arrange(desc(Observations))

input.summary.drilldown<-input.summary |> 
  group_nest(Input_data) |> 
  mutate(id=Input_data,
         type="column",
         data=map(data, mutate, name=Country, y=Observations),
         data = map(data, list_parse))
tt <- tooltip_table(c("No. of Observations(Input)"), c("{point.Observations}"))
hchart(input.summary.summ,
       "column",
       hcaes(x=Input_data, y=Observations, name=Input_data, drilldown=Input_data),
       name="Segment view",
       colorByPoint = TRUE) |> 
  hc_drilldown(
    allowPointDrilldown = TRUE,
    series = list_parse(input.summary.drilldown)
  ) |> 
  hc_tooltip(
    pointFormat = tt, # "{point.name} {point.pop}"
    useHTML = TRUE,
    valueDecimals = 0
  ) |> 
  hc_yAxis(
    title = list(text = "Number of observations")
  ) |> 
  hc_xAxis(
    title = "Segment"
  ) |> 
  hc_credits(
    enabled = TRUE,
    text = "LaNubia Data Science",
    href = "https://www.lanubia.com/"
  ) |> 
  hc_exporting(
    enabled = TRUE, # always enabled
    filename = "Input Summary"
  ) |> 
  hc_title(
    text = "Observations by segment"
  ) |> 
  hc_subtitle(
    text = "Click on the bar to view details by country"
  )

```




Simplified view



```{r echo=FALSE}
input.summary |> 
  pivot_wider(names_from = Country, values_from = Observations) |> datatable(extensions = "Buttons", 
            options = list(paging = TRUE,
                           scrollX=TRUE, 
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10, 
                           lengthMenu=c(3,5,10) ))
```



### Contacts



#### Template



SAP templates available:



```{r echo=FALSE}
datatable(data.frame(Templates=unique(rxl("./contacts/template.xlsx", sheet = "Field_Definitions")[,1])), extensions = "Buttons", 
            options = list(paging = TRUE,
                           scrollX=TRUE, 
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10, 
                           lengthMenu=c(3,5,10) ))
```




#### Summary of Errors



```{r echo=FALSE, message=FALSE, warning=FALSE}
sumerrfilepath<-list.files("./contacts/summary", pattern="*sumerror.csv", full.names = T)
errfilepath<-list.files("./contacts/summary", pattern="*_error.csv", full.names = T)

sumerrfiles<-lapply(sumerrfilepath, read.csv)
# datatable(unique(do.call(ltodf, sumerrfiles)), extensions = "Buttons", 
#             options = list(paging = TRUE,
#                            scrollX=TRUE, 
#                            searching = TRUE,
#                            ordering = TRUE,
#                            dom = 'Bfrtip',
#                            buttons = c('copy', 'csv', 'excel', 'pdf'),
#                            pageLength=10, 
#                            lengthMenu=c(3,5,10) ))

tdf<-unique(do.call(ltodf, sumerrfiles)) |> arrange(desc(Expected))
tdf<-tdf |> mutate(Pending=Expected-Actual) |> select(-Name) |> unique()

tdf |> 
  hchart("bullet", hcaes(x=Country, y=Actual, target=Expected), color="black", name="Observations (Output)") |> 
  hc_chart(inverted = TRUE) |> 
  hc_add_series(tdf, "pie", hcaes(x=Country, y=Pending), name="Pending (Major Issues)") |> 
  hc_plotOptions(
    pie = list(
      center = c('70%', '70%'),
      size = 200,
      dataLabels = list(enabled = FALSE),
      showInLegend = T
      )
    ) |> 
  hc_title(
    text="Expect vs Actual"
  ) |> 
  hc_subtitle(
    text="Pie shows number of major issues identified"
  ) |> 
  hc_credits(
    enabled = TRUE,
    text = "LaNubia Data Science",
    href = "https://www.lanubia.com/"
  ) |> 
  hc_exporting(
    enabled = TRUE, # always enabled
    filename = "ErrorSum_Contact"
  )

```



#### Error by template


```{r echo=FALSE, message=FALSE, warning=FALSE}
errfiles<-lapply(errfilepath, read.csv)



# datatable(unique(do.call(ltodf, errfiles)), extensions = "Buttons", 
#             options = list(paging = TRUE,
#                            scrollX=TRUE, 
#                            searching = TRUE,
#                            ordering = TRUE,
#                            dom = 'Bfrtip',
#                            buttons = c('copy', 'csv', 'excel', 'pdf'),
#                            pageLength=10, 
#                            lengthMenu=c(3,5,10) ))

tdf<-unique(do.call(ltodf, errfiles))

tdf<-tdf |> 
  mutate(err.deep=word(err.type,-1)) |> 
  mutate(err=word(err.type,1,-2)) |> select(-err.type) |> 
  select(c(Name, Country, err, err.deep, err.count)) |> 
  arrange(desc(err.count))

tdf.country<- tdf |>
      group_by(Country) |> 
      summarize(err.count = sum(err.count) 
      ) |> 
  arrange(err.count)


Lvl1dfStatus <- tibble(name = tdf.country$Country, y = tdf.country$err.count, drilldown = tolower(name))
Level_2_Drilldowns <- lapply(unique(tdf$Country), function(x_level) {
      tdf.err <- tdf[tdf$Country == x_level,]
      tdf.err <- tdf.err |>
        group_by(err) |>
        summarize(err.count = sum(err.count)
        ) |> arrange(err.count) 
      
      Lvl2dfStatus <- tibble(name = tdf.err$err, y = tdf.err$err.count, drilldown = tolower(paste(x_level, name, sep = "_")))
      list(id = tolower(x_level), type = "column", data = list_parse(Lvl2dfStatus), name="High Level Error")
    })
Level_3_Drilldowns <- lapply(unique(tdf.country$Country), function(x_level) {
      tdf.err <- tdf[tdf$Country == x_level,]
      lapply(unique(tdf.err$err), function(y_level) {
        tdf.err.deep <- tdf.err[tdf.err$err == y_level,]
        tdf.err.deep <- tdf.err.deep |>
          group_by(err.deep) |>
          summarize(err.count = sum(err.count)
          ) |> arrange(err.count)
        
        Lvl3dfStatus <- tibble(name = tdf.err.deep$err.deep,y = tdf.err.deep$err.count)
        list(id = tolower(paste(x_level, y_level, sep = "_")), type = "column", data = list_parse2(Lvl3dfStatus), name="Deep Dive")
      })
    }) |> unlist(recursive = FALSE)

highchart() |>
      hc_xAxis(type = "category") |>
      hc_add_series(Lvl1dfStatus, "column", hcaes(x = name, y = y),name = "Country View", showInLegend = F) |>
      hc_plotOptions(column = list(stacking = "normal"), lang=list(drillUpText ="Back")) |>
      hc_drilldown(
        allowPointDrilldown = TRUE,
        series = c(Level_2_Drilldowns, Level_3_Drilldowns)
      ) |> 
      hc_yAxis(
    title = list(text = "Number of errors")
  ) |> 
  hc_title(text="Error Count") |> 
  hc_subtitle(text="Click on bar for deep dive") |> 
  hc_credits(
    enabled = TRUE,
    text = "LaNubia Data Science",
    href = "https://www.lanubia.com/"
  ) |> 
  hc_tooltip() |> 
        hc_exporting(
    enabled = TRUE, # always enabled
    filename = "Error_Contact"
  )
```



#### Errors in details {.tabset .tabset-pills}


##### Mandatory

###### Contact


```{r}
manderrfilepath<-list.files("./contacts/errors/mandatory", pattern="*.csv", full.names = T)
manderrfiles<-lapply(manderrfilepath, read.csv)
manderrdf<-do.call(ltodf, manderrfiles)
datatable(manderrdf, extensions = "Buttons",
            options = list(paging = TRUE,
                           scrollX=TRUE,
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10,
                           lengthMenu=c(3,5,10),
                           filter=TRUE))
```

##### Codelist


```{r}
codeerrfilepath<-list.files("./contacts/errors/codelist", pattern="*.csv", full.names = T)
codeerrfiles<-lapply(codeerrfilepath, read.csv)
codeerrdf<-do.call(ltodf, codeerrfiles)

codeerrdf |> select(c(3,4)) |> 
  rename(ColValues=def.rows.val, ColNames=def.colname) |> 
  count(ColValues,ColNames) |> rename(Occurences=n) |> 
  datatable(extensions = "Buttons",
            options = list(paging = TRUE,
                           scrollX=TRUE,
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10,
                           lengthMenu=c(3,5,10),
                           filter=TRUE))

```


##### Length



```{r}
lenerrfilepath<-list.files("./contacts/errors/length", pattern="*.csv", full.names = T)
lenerrfiles<-lapply(lenerrfilepath, read.csv)
lenerrdf<-do.call(ltodf, lenerrfiles)
  datatable(lenerrdf,extensions = "Buttons",
            options = list(paging = TRUE,
                           scrollX=TRUE,
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10,
                           lengthMenu=c(3,5,10),
                           filter=TRUE))

```




### Accounts




#### Template

SAP templates available:

```{r echo=FALSE}
datatable(data.frame(Templates=unique(rxl("./accounts/template.xlsx", sheet = "Field_Definitions")[,1])), extensions = "Buttons", 
            options = list(paging = TRUE,
                           scrollX=TRUE, 
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10, 
                           lengthMenu=c(3,5,10) ))
```




#### Summary of Errors



```{r echo=FALSE, message=FALSE, warning=FALSE}
sumerrfilepath<-list.files("./accounts/summary", pattern="*sumerror.csv", full.names = T)
errfilepath<-list.files("./accounts/summary", pattern="*_error.csv", full.names = T)

sumerrfiles<-lapply(sumerrfilepath, read.csv)
# datatable(unique(do.call(ltodf, sumerrfiles)), extensions = "Buttons", 
#             options = list(paging = TRUE,
#                            scrollX=TRUE, 
#                            searching = TRUE,
#                            ordering = TRUE,
#                            dom = 'Bfrtip',
#                            buttons = c('copy', 'csv', 'excel', 'pdf'),
#                            pageLength=10, 
#                            lengthMenu=c(3,5,10) ))

tdf<-unique(do.call(ltodf, sumerrfiles)) |> arrange(desc(Expected))
tdf<-tdf |> mutate(Pending=Expected-Actual) |> select(-Name) |> unique()

tdf |> 
  hchart("bullet", hcaes(x=Country, y=Actual, target=Expected), color="black", name="Observations (Output)") |> 
  hc_chart(inverted = TRUE) |> 
  hc_add_series(tdf, "pie", hcaes(x=Country, y=Pending), name="Pending (Major Issues)") |> 
  hc_plotOptions(
    pie = list(
      center = c('70%', '70%'),
      size = 200,
      dataLabels = list(enabled = FALSE),
      showInLegend = T
      )
    ) |> 
  hc_title(
    text="Expect vs Actual"
  ) |> 
  hc_subtitle(
    text="Pie shows number of major issues identified"
  ) |> 
  hc_credits(
    enabled = TRUE,
    text = "LaNubia Data Science",
    href = "https://www.lanubia.com/"
  ) |> 
  hc_exporting(
    enabled = TRUE, # always enabled
    filename = "ErrorSumm_Account"
  )

```



#### Error by template


```{r echo=FALSE, message=FALSE, warning=FALSE}
errfiles<-lapply(errfilepath, read.csv)
# datatable(unique(do.call(ltodf, errfiles)), extensions = "Buttons", 
#             options = list(paging = TRUE,
#                            scrollX=TRUE, 
#                            searching = TRUE,
#                            ordering = TRUE,
#                            dom = 'Bfrtip',
#                            buttons = c('copy', 'csv', 'excel', 'pdf'),
#                            pageLength=10, 
#                            lengthMenu=c(3,5,10) ))

tdf<-unique(do.call(ltodf, errfiles))

tdf<-tdf |> 
  mutate(err.deep=word(err.type,-1)) |> 
  mutate(err=word(err.type,1,-2)) |> select(-err.type) |> 
  select(c(Name, Country, err, err.deep, err.count)) |> 
  arrange(desc(err.count))

tdf.country<- tdf |>
      group_by(Country) |> 
      summarize(err.count = sum(err.count) 
      ) |> 
  arrange(err.count)


Lvl1dfStatus <- tibble(name = tdf.country$Country, y = tdf.country$err.count, drilldown = tolower(name))
Level_2_Drilldowns <- lapply(unique(tdf$Country), function(x_level) {
      tdf.err <- tdf[tdf$Country == x_level,]
      tdf.err <- tdf.err |>
        group_by(err) |>
        summarize(err.count = sum(err.count)
        ) |> arrange(err.count) 
      
      Lvl2dfStatus <- tibble(name = tdf.err$err, y = tdf.err$err.count, drilldown = tolower(paste(x_level, name, sep = "_")))
      list(id = tolower(x_level), type = "column", data = list_parse(Lvl2dfStatus), name="High Level Error")
    })
Level_3_Drilldowns <- lapply(unique(tdf.country$Country), function(x_level) {
      tdf.err <- tdf[tdf$Country == x_level,]
      lapply(unique(tdf.err$err), function(y_level) {
        tdf.err.deep <- tdf.err[tdf.err$err == y_level,]
        tdf.err.deep <- tdf.err.deep |>
          group_by(err.deep) |>
          summarize(err.count = sum(err.count)
          ) |> arrange(err.count)
        
        Lvl3dfStatus <- tibble(name = tdf.err.deep$err.deep,y = tdf.err.deep$err.count)
        list(id = tolower(paste(x_level, y_level, sep = "_")), type = "column", data = list_parse2(Lvl3dfStatus), name="Deep Dive")
      })
    }) |> unlist(recursive = FALSE)

highchart() |>
      hc_xAxis(type = "category") |>
      hc_add_series(Lvl1dfStatus, "column", hcaes(x = name, y = y),name = "Country View", showInLegend = F) |>
      hc_plotOptions(column = list(stacking = "normal"), lang=list(drillUpText ="Back")) |>
      hc_drilldown(
        allowPointDrilldown = TRUE,
        series = c(Level_2_Drilldowns, Level_3_Drilldowns)
      ) |> 
      hc_yAxis(
    title = list(text = "Number of errors")
  ) |> 
  hc_title(text="Error Count") |> 
  hc_subtitle(text="Click on bar for deep dive") |> 
  hc_credits(
    enabled = TRUE,
    text = "LaNubia Data Science",
    href = "https://www.lanubia.com/"
  ) |> 
  hc_tooltip() |> 
        hc_exporting(
    enabled = TRUE, # always enabled
    filename = "Error_Account"
  )
```


#### Errors in details {.tabset .tabset-pills}

##### Mandatory {.tabset .tabset-pills}


###### Account


```{r}
manderrfilepath<-list.files("./accounts/errors/mandatory", pattern="*.csv", full.names = T)
manderrfiles<-lapply(manderrfilepath, read.csv)


manderrdf<-do.call(ltodf, manderrfiles[c(1,3,5,7,9)])

datatable(manderrdf, extensions = "Buttons",
            options = list(paging = TRUE,
                           scrollX=TRUE,
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10,
                           lengthMenu=c(3,5,10),
                           filter=TRUE))
```

###### Account Team


```{r}
manderrdf<-do.call(ltodf, manderrfiles[c(2,4,6,8,10)])

datatable(manderrdf, extensions = "Buttons",
            options = list(paging = TRUE,
                           scrollX=TRUE,
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10,
                           lengthMenu=c(3,5,10),
                           filter=TRUE))
```




##### Codelist



```{r}
codeerrfilepath<-list.files("./accounts/errors/codelist", pattern="*.csv", full.names = T)
codeerrfiles<-lapply(codeerrfilepath, read.csv)
codeerrdf<-do.call(ltodf, codeerrfiles)

codeerrdf |> select(c(3,4)) |> 
  rename(ColValues=def.rows.val, ColNames=def.colname) |> 
  count(ColValues,ColNames) |> rename(Occurences=n) |> 
  datatable(manderrdf, extensions = "Buttons",
            options = list(paging = TRUE,
                           scrollX=TRUE,
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10,
                           lengthMenu=c(3,5,10),
                           filter=TRUE))
```


##### Length



```{r}
lenerrfilepath<-list.files("./accounts/errors/length", pattern="*.csv", full.names = T)
lenerrfiles<-lapply(lenerrfilepath, read.csv)
lenerrdf<-do.call(ltodf, lenerrfiles)
  datatable(lenerrdf,extensions = "Buttons",
            options = list(paging = TRUE,
                           scrollX=TRUE,
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10,
                           lengthMenu=c(3,5,10),
                           filter=TRUE))

```



### Projects





#### Template

SAP templates available:

```{r echo=FALSE}
datatable(data.frame(Templates=unique(rxl("./projects/template.xlsx", sheet = "Field_Definitions")[,1])), extensions = "Buttons", 
            options = list(paging = TRUE,
                           scrollX=TRUE, 
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10, 
                           lengthMenu=c(3,5,10) ))
```




#### Summary of Errors



```{r echo=FALSE, message=FALSE, warning=FALSE}
sumerrfilepath<-list.files("./projects/summary", pattern="*sumerror.csv", full.names = T)
errfilepath<-list.files("./projects/summary", pattern="*_error.csv", full.names = T)

sumerrfiles<-lapply(sumerrfilepath, read.csv)
# datatable(unique(do.call(ltodf, sumerrfiles)), extensions = "Buttons", 
#             options = list(paging = TRUE,
#                            scrollX=TRUE, 
#                            searching = TRUE,
#                            ordering = TRUE,
#                            dom = 'Bfrtip',
#                            buttons = c('copy', 'csv', 'excel', 'pdf'),
#                            pageLength=10, 
#                            lengthMenu=c(3,5,10) ))

tdf<-unique(do.call(ltodf, sumerrfiles)) |> arrange(desc(Expected))
tdf<-tdf |> mutate(Pending=Expected-Actual) |> select(-Name) |> unique()

tdf |> 
  hchart("bullet", hcaes(x=Country, y=Actual, target=Expected), color="black", name="Observations (Output)") |> 
  hc_chart(inverted = TRUE) |> 
  hc_add_series(tdf, "pie", hcaes(x=Country, y=Pending), name="Pending (Major Issues)") |> 
  hc_plotOptions(
    pie = list(
      center = c('70%', '70%'),
      size = 200,
      dataLabels = list(enabled = FALSE),
      showInLegend = T
      )
    ) |> 
  hc_title(
    text="Expect vs Actual"
  ) |> 
  hc_subtitle(
    text="Pie shows number of major issues identified"
  ) |> 
  hc_credits(
    enabled = TRUE,
    text = "LaNubia Data Science",
    href = "https://www.lanubia.com/"
  ) |> 
  hc_exporting(
    enabled = TRUE, # always enabled
    filename = "ErrorSumm_Project"
  )

```



#### Error by template


```{r echo=FALSE, message=FALSE, warning=FALSE}
errfiles<-lapply(errfilepath, read.csv)
# datatable(unique(do.call(ltodf, errfiles)), extensions = "Buttons", 
#             options = list(paging = TRUE,
#                            scrollX=TRUE, 
#                            searching = TRUE,
#                            ordering = TRUE,
#                            dom = 'Bfrtip',
#                            buttons = c('copy', 'csv', 'excel', 'pdf'),
#                            pageLength=10, 
#                            lengthMenu=c(3,5,10) ))

tdf<-unique(do.call(ltodf, errfiles))

tdf<-tdf |> 
  mutate(err.deep=word(err.type,-1)) |> 
  mutate(err=word(err.type,1,-2)) |> select(-err.type) |> 
  select(c(Name, Country, err, err.deep, err.count)) |> 
  arrange(desc(err.count))

tdf.country<- tdf |>
      group_by(Country) |> 
      summarize(err.count = sum(err.count) 
      ) |> 
  arrange(err.count)


Lvl1dfStatus <- tibble(name = tdf.country$Country, y = tdf.country$err.count, drilldown = tolower(name))
Level_2_Drilldowns <- lapply(unique(tdf$Country), function(x_level) {
      tdf.err <- tdf[tdf$Country == x_level,]
      tdf.err <- tdf.err |>
        group_by(err) |>
        summarize(err.count = sum(err.count)
        ) |> arrange(err.count) 
      
      Lvl2dfStatus <- tibble(name = tdf.err$err, y = tdf.err$err.count, drilldown = tolower(paste(x_level, name, sep = "_")))
      list(id = tolower(x_level), type = "column", data = list_parse(Lvl2dfStatus), name="High Level Error")
    })
Level_3_Drilldowns <- lapply(unique(tdf.country$Country), function(x_level) {
      tdf.err <- tdf[tdf$Country == x_level,]
      lapply(unique(tdf.err$err), function(y_level) {
        tdf.err.deep <- tdf.err[tdf.err$err == y_level,]
        tdf.err.deep <- tdf.err.deep |>
          group_by(err.deep) |>
          summarize(err.count = sum(err.count)
          ) |> arrange(err.count)
        
        Lvl3dfStatus <- tibble(name = tdf.err.deep$err.deep,y = tdf.err.deep$err.count)
        list(id = tolower(paste(x_level, y_level, sep = "_")), type = "column", data = list_parse2(Lvl3dfStatus), name="Deep Dive")
      })
    }) |> unlist(recursive = FALSE)

highchart() |>
      hc_xAxis(type = "category") |>
      hc_add_series(Lvl1dfStatus, "column", hcaes(x = name, y = y),name = "Country View", showInLegend = F) |>
      hc_plotOptions(column = list(stacking = "normal"), lang=list(drillUpText ="Back")) |>
      hc_drilldown(
        allowPointDrilldown = TRUE,
        series = c(Level_2_Drilldowns, Level_3_Drilldowns)
      ) |> 
      hc_yAxis(
    title = list(text = "Number of errors")
  ) |> 
  hc_title(text="Error Count") |> 
  hc_subtitle(text="Click on bar for deep dive") |> 
  hc_tooltip() |> 
  hc_credits(
    enabled = TRUE,
    text = "LaNubia Data Science",
    href = "https://www.lanubia.com/"
  ) |> 
        hc_exporting(
    enabled = TRUE, # always enabled
    filename = "Error_Project"
  )
```


#### Errors in details {.tabset .tabset-pills}

##### Mandatory {.tabset .tabset-pills}


###### Opportunity


```{r}
manderrfilepath<-list.files("./projects/errors/mandatory", pattern="*.csv", full.names = T)
manderrfiles<-lapply(manderrfilepath, read.csv)


manderrdf<-do.call(ltodf, manderrfiles[c(1,3,6)])

datatable(manderrdf, extensions = "Buttons",
            options = list(paging = TRUE,
                           scrollX=TRUE,
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10,
                           lengthMenu=c(3,5,10),
                           filter=TRUE))
```



###### Opportunity Sales Team Party In


```{r}
manderrfilepath<-list.files("./projects/errors/mandatory", pattern="*.csv", full.names = T)
manderrfiles<-lapply(manderrfilepath, read.csv)


manderrdf<-do.call(ltodf, manderrfiles[c(2,5,8)])

datatable(manderrdf, extensions = "Buttons",
            options = list(paging = TRUE,
                           scrollX=TRUE,
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10,
                           lengthMenu=c(3,5,10),
                           filter=TRUE))
```



###### Opportunity Party Information


```{r}
manderrfilepath<-list.files("./projects/errors/mandatory", pattern="*.csv", full.names = T)
manderrfiles<-lapply(manderrfilepath, read.csv)


manderrdf<-do.call(ltodf, manderrfiles[c(4,7)])

datatable(manderrdf, extensions = "Buttons",
            options = list(paging = TRUE,
                           scrollX=TRUE,
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10,
                           lengthMenu=c(3,5,10),
                           filter=TRUE))
```


##### Codelist

```{r}
codeerrfilepath<-list.files("./projects/errors/codelist", pattern="*.csv", full.names = T)
codeerrfiles<-lapply(codeerrfilepath, read.csv)
#codeerrdf<-do.call(ltodf, codeerrfiles)




data.table::rbindlist(codeerrfiles) |> select(c(3,4)) |> 
  rename(ColValues=def.rows.val, ColNames=def.colname) |> 
  count(ColValues,ColNames) |> rename(Occurences=n) |> 
  datatable(manderrdf, extensions = "Buttons",
            options = list(paging = TRUE,
                           scrollX=TRUE,
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10,
                           lengthMenu=c(3,5,10),
                           filter=TRUE))
```



##### Length



```{r}
lenerrfilepath<-list.files("./contacts/errors/length", pattern="*.csv", full.names = T)
lenerrfiles<-lapply(lenerrfilepath, read.csv)
lenerrdf<-do.call(ltodf, lenerrfiles)
  datatable(lenerrdf,extensions = "Buttons",
            options = list(paging = TRUE,
                           scrollX=TRUE,
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10,
                           lengthMenu=c(3,5,10),
                           filter=TRUE))

```



### Support


#### Template

SAP templates available:

```{r echo=FALSE}
datatable(data.frame(Templates=unique(rxl("./support/template.xlsx", sheet = "Field_Definitions")[,1])), extensions = "Buttons", 
            options = list(paging = TRUE,
                           scrollX=TRUE, 
                           searching = TRUE,
                           ordering = TRUE,
                           dom = 'Bfrtip',
                           buttons = c('copy', 'csv', 'excel', 'pdf'),
                           pageLength=10, 
                           lengthMenu=c(3,5,10) ))
```




#### Summary of Errors



```{r echo=FALSE, message=FALSE, warning=FALSE}
sumerrfilepath<-list.files("./support/summary", pattern="*sumerror.csv", full.names = T)
errfilepath<-list.files("./support/summary", pattern="*_error.csv", full.names = T)

sumerrfiles<-lapply(sumerrfilepath, read.csv)
# datatable(unique(do.call(ltodf, sumerrfiles)), extensions = "Buttons", 
#             options = list(paging = TRUE,
#                            scrollX=TRUE, 
#                            searching = TRUE,
#                            ordering = TRUE,
#                            dom = 'Bfrtip',
#                            buttons = c('copy', 'csv', 'excel', 'pdf'),
#                            pageLength=10, 
#                            lengthMenu=c(3,5,10) ))

tdf<-unique(do.call(ltodf, sumerrfiles)) |> arrange(desc(Expected))
tdf<-tdf |> mutate(Pending=Expected-Actual) |> select(-Name) |> unique()

tdf |> 
  hchart("bullet", hcaes(x=Country, y=Actual, target=Expected), color="black", name="Observations (Output)") |> 
  hc_chart(inverted = TRUE) |> 
  hc_add_series(tdf, "pie", hcaes(x=Country, y=Pending), name="Pending (Major Issues)") |> 
  hc_plotOptions(
    pie = list(
      center = c('70%', '70%'),
      size = 200,
      dataLabels = list(enabled = FALSE),
      showInLegend = T
      )
    ) |> 
  hc_title(
    text="Expect vs Actual"
  ) |> 
  hc_subtitle(
    text="Pie shows number of major issues identified"
  ) |> 
  hc_credits(
    enabled = TRUE,
    text = "LaNubia Data Science",
    href = "https://www.lanubia.com/"
  ) |> 
  hc_exporting(
    enabled = TRUE, # always enabled
    filename = "ErrorSumm_Support"
  )

```



#### Error by template


```{r echo=FALSE, message=FALSE, warning=FALSE}
errfiles<-lapply(errfilepath, read.csv)
# datatable(unique(do.call(ltodf, errfiles)), extensions = "Buttons", 
#             options = list(paging = TRUE,
#                            scrollX=TRUE, 
#                            searching = TRUE,
#                            ordering = TRUE,
#                            dom = 'Bfrtip',
#                            buttons = c('copy', 'csv', 'excel', 'pdf'),
#                            pageLength=10, 
#                            lengthMenu=c(3,5,10) ))

tdf<-unique(do.call(ltodf, errfiles))

tdf<-tdf |> 
  mutate(err.deep=word(err.type,-1)) |> 
  mutate(err=word(err.type,1,-2)) |> select(-err.type) |> 
  select(c(Name, Country, err, err.deep, err.count)) |> 
  arrange(desc(err.count))

tdf.country<- tdf |>
      group_by(Country) |> 
      summarize(err.count = sum(err.count) 
      ) |> 
  arrange(err.count)


Lvl1dfStatus <- tibble(name = tdf.country$Country, y = tdf.country$err.count, drilldown = tolower(name))
Level_2_Drilldowns <- lapply(unique(tdf$Country), function(x_level) {
      tdf.err <- tdf[tdf$Country == x_level,]
      tdf.err <- tdf.err |>
        group_by(err) |>
        summarize(err.count = sum(err.count)
        ) |> arrange(err.count) 
      
      Lvl2dfStatus <- tibble(name = tdf.err$err, y = tdf.err$err.count, drilldown = tolower(paste(x_level, name, sep = "_")))
      list(id = tolower(x_level), type = "column", data = list_parse(Lvl2dfStatus), name="High Level Error")
    })
Level_3_Drilldowns <- lapply(unique(tdf.country$Country), function(x_level) {
      tdf.err <- tdf[tdf$Country == x_level,]
      lapply(unique(tdf.err$err), function(y_level) {
        tdf.err.deep <- tdf.err[tdf.err$err == y_level,]
        tdf.err.deep <- tdf.err.deep |>
          group_by(err.deep) |>
          summarize(err.count = sum(err.count)
          ) |> arrange(err.count)
        
        Lvl3dfStatus <- tibble(name = tdf.err.deep$err.deep,y = tdf.err.deep$err.count)
        list(id = tolower(paste(x_level, y_level, sep = "_")), type = "column", data = list_parse2(Lvl3dfStatus), name="Deep Dive")
      })
    }) |> unlist(recursive = FALSE)

highchart() |>
      hc_xAxis(type = "category") |>
      hc_add_series(Lvl1dfStatus, "column", hcaes(x = name, y = y),name = "Country View", showInLegend = F) |>
      hc_plotOptions(column = list(stacking = "normal"), lang=list(drillUpText ="Back")) |>
      hc_drilldown(
        allowPointDrilldown = TRUE,
        series = c(Level_2_Drilldowns, Level_3_Drilldowns)
      ) |> 
      hc_yAxis(
    title = list(text = "Number of errors")
  ) |> 
  hc_title(text="Error Count") |> 
  hc_subtitle(text="Click on bar for deep dive") |> 
  hc_tooltip() |> 
  hc_credits(
    enabled = TRUE,
    text = "LaNubia Data Science",
    href = "https://www.lanubia.com/"
  ) |> 
        hc_exporting(
    enabled = TRUE, # always enabled
    filename = "Error_Support"
  )
```